PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34304
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 261aa    MW: 28964.8 Da    PI: 6.5076
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34304genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.81e-55791821101
                      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 
                                ql++fw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaa
  Tp57577_TGAC_v2_mRNA34304  79 QLQAFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAA 162
                                89******99999*********************************************************************** PP

                      NF-YC  82 avtrtdifdflvdivprdel 101
                                a+trtdifdflvdivpr++l
  Tp57577_TGAC_v2_mRNA34304 163 AITRTDIFDFLVDIVPREDL 182
                                *****************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.02E-3354173IPR009072Histone-fold
PfamPF008081.6E-21101164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-37102179IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDHQGHNQNP QMGVVGSGGQ MPYGSNPYQS NQMTGAPGSV VTSVGGMQST GQPAGGQMGQ  60
HQLAYQHIHQ QQQQQLQQQL QAFWANQYQE IEKVTDFKNH SLPLARIKKI MKADEDVRMI  120
SAEAPVIFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE  180
DLKDEVLASI PRGTMPVGGP ADALPYCYMP SQHAPQVGPT GVIMGKPVMD PNMYAQQPHP  240
YMAPQMWPQP SDQRPPSPDH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B7e-4189179597NF-YC
4awl_C6e-4194179994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B6e-4194179994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1502440.0AC150244.2 Medicago truncatula chromosome 7 clone mth2-180p14, complete sequence.
GenBankJQ9182940.0JQ918294.1 Medicago truncatula nuclear transcription factor Y subunit C2 (NF-YC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626304.11e-177nuclear transcription factor Y protein
SwissprotQ8L4B22e-89NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLG7KYQ41e-177G7KYQ4_MEDTR; Nuclear transcription factor Y protein
TrEMBLI3TAX91e-177I3TAX9_MEDTR; Nuclear transcription factor Y subunit C2
STRINGGLYMA19G42460.11e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.45e-81nuclear factor Y, subunit C9